Renata Kabiljo's Homepage

Renata Kabiljo

Position: Postdoctoral Research Fellow in Bioinformatics
Department: Faculty of Health and Medical Sciences
Address: University of Surrey, University of Surrey, Guildford, Surrey GU2 7XH
Phone: 01483682539
Email: r.kabiljo@surrey.ac.uk

Research Interests

Text Mining

In my PhD ('An assessment of systems for gene/protein named entity recognition and interaction extraction') I have dealt with biomedical text mining: assessing its current state-of-the art, by examining various freely available systems that can be used to tackle this important task of mining the enormous body of biomedical literature. This PhD was done under supervision of Dr. Adrian Shepherd at Birkbeck College, University of London.

Microarray analysis

I am currently working as a postdoctoral research fellow on the AFOSR funded project : 'Cognitive vulnerability following extended wakefullness in defined genotypes'. I am working in the microarray lab with Prof. Colin Smith . The project is a joint project between the University of Surrey and the Surrey Sleep Research Centre

Publications

Kabiljo, R., Clegg, A.B., Shepherd, A.J. (2009). A realistic assessment of methods for extracting gene/protein interactions from free text. BMC Bioinformatics 10:233

Kabiljo, R., Shepherd, A. (2008). Protein name tagging in the immunological domain. In Proceedings of the Third Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, September 2008, 141-144

Kabiljo, R., Stoycheva, D., Shepherd, A.J. (2007). ProSpecTome: a new tagged corpus for protein named entity recognition. In Proceedings of the Annual Meeting of the ISMB BioLINK Special Interest Group on Text Data Mining, Vienna, Austria, July 2007, 24-27