Please note that the GEO data series matrix for this study (accession: GSE48113) is correct from 16/04/2014

Supplementary files for Archer SN et. al PNAS 2014

Below you will find the Ctyoscape session files for the networks provided in Archer et al 2014. These files will allow you to zoom in and out of the networks and view associated information.

To download the files below please right-click on the given links.

Dataset_S4: Cytoscape session file for the ANOVA-interaction interaction network (see SI methods for description of reconstruction). Node Attributes to include: ID (as given by Metacore), Connectedness (number of connections, total in- and out- degrees), GO:terms (the top 10 GO biological process term to colour the node by, NA indicates no association to a GO term in the top 10 enriched processes), Gene Symbol (gene symbol used for annotation purposes), PrintName (used for visualising the gene names in the graphical representation of the network only), Signal (Log2 D4-D1 ratio), canonicalName (Gene name within MetaCore), up_or_down (UP to indicate a Average Log2 D4-D1 ratio > 0; DOWN to indicate a Average Log2 D4-D1 ratio < 0)

Dataset_S5: Cytoscape session file for the ANOVA main effect interaction network (see SI methods for description of reconstruction). Node Attributes to include: ID (Gene Symbol), Connectedness (number of connections, total in- and out- degrees), GO:terms (the top 10 GO biological process term to colour the node by, NA indicates no association to a GO term in the top 10 enriched processes), Gene_Symbol_toShow (used for visualising the gene names in the graphical representation of the network only), FoldChange (Log2 D4-D1 ratio), canonicalName (Gene name within MetaCore), up_or_down_foldChange (UP to indicate a Average Log2 D4-D1 ratio > 0; DOWN to indicate a Average Log2 D4-D1 ratio < 0)

Probe name targets: A list of probenames on our array and the genes that they target.